species:   Scscl
pid:       PID1744
parent:    Ssc-milR-220
paralog:   
locus:     NW_001820835.1:1976499-1976580
matures:   ['UAGAGAUAUGGUUGAUAUGUGCC', 'UGCUACGUCUUCCGUAUCCUUCU']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820835.1:1976499-1976580

1 out of bounds
4 alignments
3 proper strand
2 stranded perfect matches

            *************************          *************************          
ACGUAAUCCGUGGGUGCUACGUCUUCCGUAUCCUUCUCGUACCAACACUUAGAGAUAUGGUUGAUAUGUGCCUUGAUAAAUC
.....(((...((((((...(((..(((((((((....((....))....)).)))))))..)))..)))))).))).....
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCC---------- l=23 a=2 c
--------------UGCUACGUCUUCCGUAUCCUUCU--------------------------------------------- l=23 a=0 c*
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCC---------- l=23 a=2 ma
--------------UGCUACGUCUUCCGUAUCCUUCU--------------------------------------------- l=23 a=0 ma*

-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGa----------- l=22 a=1 
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCC---------- l=23 a=2 (c,ma)

mb-01011
ax-1001011
ku-01
ss-101110101100
fn-101
